U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

DRX498849: Sequel II sequencing of SAMD00659499
1 PACBIO_SMRT (Sequel II) run: 89,716 spots, 916.7M bases, 608.6Mb downloads

Submitted by: OSAKA_ENG
Study: Genome sequencing of duckweed-based synthetic bacterial community
show Abstracthide Abstract
We have previously established a synthetic bacterial community consisting six bacterial strains, which stably and reproducibly coexist on the surface of a small aquatic plant, duckweed (Lemna minor) (Ishizawa et al., 2020, Microbes and Environments 35, ME20112). This synthetic ecosystem mimics the family-level structure of the natural duckweed microbiome, serving as a useful experimental system to study microbial community assembly. To understand the molecular basis of the stable community assembly in this synthetic ecosystem, this project sets out to obtaine complete genome sequences of the six bacterial strains.
Sample: Novosphingobium olei DW067
SAMD00659499 • DRS344448 • All experiments • All runs
Library:
Name: DW067_HiFi
Instrument: Sequel II
Strategy: WGS
Source: GENOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol: The genomic DNA was sheared using g-TUBE (Covaris) and size selected using the BluePippin system with 0.75% Agarose Cassette (Sage Science) for PacBio Sequel II HiFi sequencing
Runs: 1 run, 89,716 spots, 916.7M bases, 608.6Mb
Run# of Spots# of BasesSizePublished
DRR51496389,716916.7M608.6Mb2023-12-05

ID:
30814276

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...